miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
30018246 NC_004723.1 Pear latent virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20953 + 1059 90 20 -27.21 NP_835239 5' arm      3' arm
20954 + 1362 90 27 -25.3 NP_835239 5' arm      3' arm
20955 + 3546 86 21.5 -24.9 NP_835241 5' arm      3' arm
20956 - 1541 90 20 -22.3 NP_835239 5' arm      3' arm
20957 - 1874 89 21.5 -23.8 NP_835239 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.