miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366701 NC_004665.1 Pseudomonas phage gh-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18011 - 12011 90 19.5 -19.5 NP_813763 5' arm      3' arm
17990 + 31393 90 21 -19.6 NP_813780 5' arm      3' arm
17976 + 9756 90 20 -19.8 NP_813760 5' arm      3' arm
18014 - 19658 85 20.5 -19.8 NP_813773 5' arm      3' arm
18009 - 9811 87 19.5 -20 NP_813760 5' arm      3' arm
17996 - 2058 85 22.5 -20 NP_813747 5' arm      3' arm
18032 - 35372 90 23 -20 NP_813786 5' arm      3' arm
18029 - 34499 90 20.5 -20.2 NP_813785 5' arm      3' arm
17995 - 1075 90 23 -20.3 5' arm      3' arm
18017 - 21064 90 21 -20.3 NP_813774 5' arm      3' arm
17984 + 19271 90 19.5 -20.4 NP_813773 5' arm      3' arm
18013 - 15964 88 21.5 -20.5 NP_813767 5' arm      3' arm
17991 + 33727 88 21.5 -20.5 NP_813782 5' arm      3' arm
18030 - 34639 83 21 -20.7 NP_813785 5' arm      3' arm
17982 + 18200 89 21.5 -20.9 NP_813772 5' arm      3' arm
17971 + 5199 90 21 -21 NP_813751 5' arm      3' arm
18006 - 7240 88 21.5 -21.1 NP_813755 5' arm      3' arm
18007 - 8114 89 21 -21.1 NP_813757 5' arm      3' arm
18019 - 21866 86 20 -21.4 NP_813776 5' arm      3' arm
17977 + 12667 90 22.5 -21.4 NP_813764 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.