miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
18001	-	3836	89	26	-26.4	NP_813748		5' arm      3' arm
17974	+	8954	90	25.5	-21.5	NP_813759		5' arm      3' arm
17975	+	9312	86	25	-28.7	NP_813759		5' arm      3' arm
17998	-	2570	85	24.5	-24.6	NP_813747		5' arm      3' arm
17964	+	157	90	23.5	-29.4			5' arm      3' arm
18004	-	4592	83	23.5	-22.3	NP_813751		5' arm      3' arm
18027	-	30813	90	23	-21.7	NP_813780		5' arm      3' arm
17995	-	1075	90	23	-20.3			5' arm      3' arm
18032	-	35372	90	23	-20	NP_813786		5' arm      3' arm
18022	-	24108	84	23	-22.5	NP_813776		5' arm      3' arm
17973	+	6463	89	23	-27.1	NP_813752		5' arm      3' arm
18023	-	25111	88	23	-24.9	NP_813778		5' arm      3' arm
18021	-	23071	87	23	-22.2	NP_813776		5' arm      3' arm
17996	-	2058	85	22.5	-20	NP_813747		5' arm      3' arm
17968	+	3525	90	22.5	-22	NP_813747		5' arm      3' arm
17981	+	17964	90	22.5	-23.5	NP_813772		5' arm      3' arm
17994	-	528	82	22.5	-26.4			5' arm      3' arm
17977	+	12667	90	22.5	-21.4	NP_813764		5' arm      3' arm
18028	-	32831	85	22.5	-21.6	NP_813781		5' arm      3' arm
17993	+	37200	89	22	-22.3			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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