miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366701 NC_004665.1 Pseudomonas phage gh-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18030 - 34639 83 21 -20.7 NP_813785 5' arm      3' arm
17972 + 6023 90 20.5 -24.6 NP_813753 5' arm      3' arm
17980 + 17059 89 20.5 -24.5 NP_813771 5' arm      3' arm
18014 - 19658 85 20.5 -19.8 NP_813773 5' arm      3' arm
18016 - 20700 90 20.5 -21.9 NP_813774 5' arm      3' arm
18018 - 21237 89 20.5 -24.2 NP_813775 5' arm      3' arm
18020 - 22305 89 20.5 -22.3 NP_813776 5' arm      3' arm
18029 - 34499 90 20.5 -20.2 NP_813785 5' arm      3' arm
18019 - 21866 86 20 -21.4 NP_813776 5' arm      3' arm
18015 - 19805 88 20 -23.8 NP_813773 5' arm      3' arm
17976 + 9756 90 20 -19.8 NP_813760 5' arm      3' arm
18024 - 27659 88 20 -22.4 NP_813780 5' arm      3' arm
17999 - 2913 88 20 -22.4 NP_813747 5' arm      3' arm
17984 + 19271 90 19.5 -20.4 NP_813773 5' arm      3' arm
18011 - 12011 90 19.5 -19.5 NP_813763 5' arm      3' arm
17969 + 4387 86 19.5 -25.3 NP_813750 5' arm      3' arm
17985 + 22311 88 19.5 -23.2 NP_813776 5' arm      3' arm
17983 + 18788 85 19.5 -21.6 NP_813772 5' arm      3' arm
18009 - 9811 87 19.5 -20 NP_813760 5' arm      3' arm
18031 - 35195 89 19.5 -25.8 NP_813786 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.