miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
341	-	31031	90	24.5	-20.6	AP_000290		5' arm      3' arm
340	-	25705	86	19.5	-23.3	AP_000278		5' arm      3' arm
339	-	23877	90	21.5	-22.6	AP_000278		5' arm      3' arm
338	-	21384	87	21	-24.6	AP_000275		5' arm      3' arm
337	-	18339	89	20	-22.4	AP_000274		5' arm      3' arm
336	-	18101	90	22	-23.1	AP_000274		5' arm      3' arm
335	-	17304	89	21	-19.8	AP_000272		5' arm      3' arm
334	-	16743	88	20	-24.5	AP_000272		5' arm      3' arm
333	-	16209	90	23	-28.7	AP_000271		5' arm      3' arm
332	-	15766	89	21	-27.8	AP_000271		5' arm      3' arm
331	-	15595	90	20	-20.3	AP_000270		5' arm      3' arm
330	-	12480	83	20.5	-20.7	AP_000269		5' arm      3' arm
329	-	11021	90	25	-24.8	AP_000268		5' arm      3' arm
328	-	568	88	19	-22.8			5' arm      3' arm
327	+	33625	90	22	-24	AP_000293		5' arm      3' arm
326	+	27475	89	19.5	-21	AP_000282		5' arm      3' arm
325	+	27136	88	20	-21.9	AP_000281		5' arm      3' arm
324	+	25029	81	21	-25.9	AP_000278		5' arm      3' arm
323	+	24757	84	19.5	-20.3	AP_000278		5' arm      3' arm
322	+	18759	81	22.5	-21.5	AP_000275		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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