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GenBank Identifier | RefSeq Acc. | Name |
52093349 | NC_006271.1 | Cherry rasp leaf virus RNA1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
29703 | + | 205 | 88 | 20.5 | -24.8 | YP_081444 | 5' arm 3' arm | ||
29704 | + | 331 | 90 | 20 | -27.7 | YP_081444 | 5' arm 3' arm | ||
29705 | + | 579 | 90 | 21 | -24.4 | YP_081444 | 5' arm 3' arm | ||
29706 | + | 808 | 90 | 21.5 | -22.4 | YP_081444 | 5' arm 3' arm | ||
29707 | + | 1422 | 88 | 19 | -19.9 | YP_081444 | 5' arm 3' arm | ||
29708 | + | 2142 | 89 | 24.5 | -31.1 | YP_081444 | 5' arm 3' arm | ||
29709 | + | 2394 | 90 | 22 | -21.3 | YP_081444 | 5' arm 3' arm | ||
29710 | + | 3364 | 87 | 23 | -19.6 | YP_081444 | 5' arm 3' arm | ||
29711 | + | 4309 | 89 | 21 | -25.3 | YP_081444 | 5' arm 3' arm | ||
29712 | + | 5165 | 87 | 25 | -28.9 | YP_081444 | 5' arm 3' arm | ||
29713 | + | 6578 | 87 | 22.5 | -22.3 | YP_081444 | 5' arm 3' arm | ||
29714 | - | 790 | 88 | 20 | -21.9 | YP_081444 | 5' arm 3' arm | ||
29715 | + | 1515 | 89 | 23 | -28.2 | YP_081445 | 5' arm 3' arm | ||
29716 | + | 1651 | 86 | 22 | -20.7 | YP_081445 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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