miRNA display CGI


Results 1 - 20 of 33 are showing below:
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GenBank Identifier RefSeq Acc. Name
22549402 NC_004117.1 Mamestra configurata nucleopolyhedrovirus B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16565 + 18102 90 19 -26.7 NP_689193 5' arm      3' arm
16593 - 135605 90 19 -20.6 5' arm      3' arm
16589 - 92876 90 19 -25.6 NP_689273 5' arm      3' arm
16586 - 51758 90 19.5 -19.9 NP_689229 5' arm      3' arm
16584 - 34434 90 19.5 -21.8 NP_689209 5' arm      3' arm
16588 - 83904 84 19.5 -25.1 NP_689264 5' arm      3' arm
16567 + 19263 90 19.5 -22.4 NP_689194 5' arm      3' arm
16573 + 67701 90 20 -24.4 NP_689248 5' arm      3' arm
16578 - 6006 90 20.5 -22.9 NP_689180 5' arm      3' arm
16577 + 146954 88 20.5 -22 NP_689331 5' arm      3' arm
16581 - 19810 88 21 -23.3 NP_689194 5' arm      3' arm
16579 - 7434 89 21 -23.34 NP_689181 5' arm      3' arm
16594 - 135947 89 21 -21.5 NP_689317 5' arm      3' arm
16563 + 5321 88 21.5 -21.4 NP_689179 5' arm      3' arm
16568 + 19622 89 21.5 -21 NP_689194 5' arm      3' arm
16566 + 19057 86 21.5 -19.4 NP_689194 5' arm      3' arm
16583 - 32143 90 21.5 -32.8 NP_689207 5' arm      3' arm
16580 - 18323 86 22 -26.4 5' arm      3' arm
16585 - 37842 86 22 -19.5 NP_689212 5' arm      3' arm
16575 + 96247 90 22 -22.8 NP_689275 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.