miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565766 NC_004680.1 Mycobacteriophage Che8 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18213 - 40121 89 22.5 -36.7 5' arm      3' arm
18064 + 5834 88 20.5 -20.12 5' arm      3' arm
18072 + 8379 90 21.5 -19.5 5' arm      3' arm
18127 + 34998 89 21 -21 5' arm      3' arm
18205 - 34353 88 22.5 -36.4 5' arm      3' arm
18200 - 32766 89 20 -25.8 5' arm      3' arm
18206 - 35877 87 21.5 -20.5 5' arm      3' arm
18201 - 32962 87 22.5 -32.5 5' arm      3' arm
18207 - 36109 90 20 -20.1 5' arm      3' arm
18167 - 4434 88 23 -20.2 5' arm      3' arm
18048 + 817 89 23 -22.5 5' arm      3' arm
18046 + 472 90 20.5 -25.9 NP_817339 5' arm      3' arm
18049 + 1018 88 25 -27.3 NP_817340 5' arm      3' arm
18053 + 1917 87 24.5 -25.6 NP_817340 5' arm      3' arm
18050 + 1502 89 23.5 -22.4 NP_817340 5' arm      3' arm
18052 + 1784 87 23 -21 NP_817340 5' arm      3' arm
18054 + 2068 87 20.5 -21.4 NP_817340 5' arm      3' arm
18047 + 627 90 22.5 -29.6 NP_817340 5' arm      3' arm
18051 + 1611 90 21.5 -22.3 NP_817340 5' arm      3' arm
18163 - 1198 86 19.5 -31.3 NP_817340 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.