miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18387 - 13203 89 20.5 -36 5' arm      3' arm
18537 - 75597 89 25.5 -21.4 5' arm      3' arm
18538 - 75733 87 23.5 -23.9 5' arm      3' arm
18536 - 75435 90 22.5 -21.8 5' arm      3' arm
18298 + 30325 90 20.5 -27.3 5' arm      3' arm
18296 + 29894 89 20.5 -22.7 5' arm      3' arm
18351 + 70637 87 23 -27.3 5' arm      3' arm
18263 + 9632 86 19 -34.3 5' arm      3' arm
18312 + 38070 85 21 -20.2 5' arm      3' arm
18523 - 67599 88 21 -19.82 5' arm      3' arm
18348 + 70055 90 22.5 -25.1 5' arm      3' arm
18315 + 43477 86 26.5 -21.4 5' arm      3' arm
18431 - 30039 89 22 -34.1 5' arm      3' arm
18450 - 38155 87 21.5 -24.9 5' arm      3' arm
18503 - 57298 90 19 -21.1 5' arm      3' arm
18247 + 162 89 20 -25.2 5' arm      3' arm
18385 - 12660 90 20.5 -25.9 5' arm      3' arm
18458 - 40850 89 20.5 -20 5' arm      3' arm
18529 - 70724 89 24 -29.4 5' arm      3' arm
18307 + 35856 88 20 -21.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.