miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18518 - 64407 90 23.5 -28.9 NP_817558 5' arm      3' arm
18517 - 63853 87 19 -21 NP_817557 5' arm      3' arm
18516 - 63567 90 20 -21.8 NP_817556 5' arm      3' arm
18515 - 63263 89 19.5 -26.6 NP_817555 5' arm      3' arm
18514 - 62595 90 23 -25.9 NP_817553 5' arm      3' arm
18513 - 62146 86 22.5 -24.3 NP_817552 5' arm      3' arm
18512 - 61913 88 22 -24.7 NP_817552 5' arm      3' arm
18511 - 60726 88 20 -28.9 NP_817550 5' arm      3' arm
18510 - 59994 85 19.5 -21 NP_817549 5' arm      3' arm
18509 - 59669 88 22 -23.2 NP_817548 5' arm      3' arm
18508 - 59231 85 23.5 -21.1 NP_817547 5' arm      3' arm
18507 - 59002 90 23 -28.7 NP_817546 5' arm      3' arm
18506 - 58566 86 22.5 -23.1 NP_817545 5' arm      3' arm
18505 - 58096 87 20 -25.2 NP_817543 5' arm      3' arm
18504 - 57813 80 22 -28.1 NP_817543 5' arm      3' arm
18503 - 57298 90 19 -21.1 5' arm      3' arm
18502 - 57188 86 21.5 -32.4 NP_817542 5' arm      3' arm
18501 - 56889 89 21 -22.7 NP_817542 5' arm      3' arm
18500 - 56528 90 21 -23.7 NP_817542 5' arm      3' arm
18499 - 56257 89 23 -26.9 NP_817542 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.