miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18526 - 68668 90 21.5 -26 NP_817569 5' arm      3' arm
18524 - 67817 90 22.5 -21 NP_817566 5' arm      3' arm
18343 + 67219 90 20 -23.1 NP_817564 5' arm      3' arm
18522 - 67118 86 23 -22.1 NP_817564 5' arm      3' arm
18342 + 66973 89 23 -30.8 NP_817564 5' arm      3' arm
18341 + 66777 89 19.5 -20.7 NP_817564 5' arm      3' arm
18344 + 67327 89 19 -21.1 NP_817564 5' arm      3' arm
18521 - 66221 90 22.5 -24.6 NP_817562 5' arm      3' arm
18520 - 65812 81 21.5 -20.2 NP_817562 5' arm      3' arm
18340 + 65843 90 20 -22.8 NP_817562 5' arm      3' arm
18339 + 65694 90 20 -22.9 NP_817562 5' arm      3' arm
18519 - 64835 90 19.5 -24.6 NP_817560 5' arm      3' arm
18338 + 64230 89 19 -24.8 NP_817558 5' arm      3' arm
18518 - 64407 90 23.5 -28.9 NP_817558 5' arm      3' arm
18337 + 64105 88 19.5 -22.9 NP_817558 5' arm      3' arm
18517 - 63853 87 19 -21 NP_817557 5' arm      3' arm
18516 - 63567 90 20 -21.8 NP_817556 5' arm      3' arm
18515 - 63263 89 19.5 -26.6 NP_817555 5' arm      3' arm
18335 + 63176 87 24.5 -35.1 NP_817555 5' arm      3' arm
18336 + 63323 90 19.5 -35.3 NP_817555 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.