miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18516 - 63567 90 20 -21.8 NP_817556 5' arm      3' arm
18521 - 66221 90 22.5 -24.6 NP_817562 5' arm      3' arm
18524 - 67817 90 22.5 -21 NP_817566 5' arm      3' arm
18532 - 72284 88 21.5 -22.3 NP_817581 5' arm      3' arm
18510 - 59994 85 19.5 -21 NP_817549 5' arm      3' arm
18507 - 59002 90 23 -28.7 NP_817546 5' arm      3' arm
18518 - 64407 90 23.5 -28.9 NP_817558 5' arm      3' arm
18536 - 75435 90 22.5 -21.8 5' arm      3' arm
18508 - 59231 85 23.5 -21.1 NP_817547 5' arm      3' arm
18538 - 75733 87 23.5 -23.9 5' arm      3' arm
18514 - 62595 90 23 -25.9 NP_817553 5' arm      3' arm
18519 - 64835 90 19.5 -24.6 NP_817560 5' arm      3' arm
18528 - 69574 87 20.5 -22.9 NP_817575 5' arm      3' arm
18526 - 68668 90 21.5 -26 NP_817569 5' arm      3' arm
18534 - 73242 89 19 -19.4 NP_817584 5' arm      3' arm
18535 - 74047 87 20.5 -30.5 NP_817587 5' arm      3' arm
18502 - 57188 86 21.5 -32.4 NP_817542 5' arm      3' arm
18492 - 53555 88 26 -19.7 NP_817536 5' arm      3' arm
18504 - 57813 80 22 -28.1 NP_817543 5' arm      3' arm
18506 - 58566 86 22.5 -23.1 NP_817545 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.