miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566193 NC_004684.1 Mycobacteriophage Rosebush virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19004 + 17975 86 23 -22.7 NP_817782 5' arm      3' arm
18989 + 8903 88 20 -26.4 NP_817773 5' arm      3' arm
18992 + 12398 85 23 -22.8 5' arm      3' arm
18994 + 13349 87 22 -24.8 NP_817776 5' arm      3' arm
18995 + 13626 89 21.5 -31.1 NP_817776 5' arm      3' arm
18993 + 13213 90 21 -21.9 NP_817776 5' arm      3' arm
18991 + 10984 87 20 -21.7 NP_817774 5' arm      3' arm
18990 + 10056 87 19.5 -22.5 NP_817774 5' arm      3' arm
18996 + 13869 86 19 -22.9 NP_817776 5' arm      3' arm
18988 + 7987 88 20 -25.6 NP_817773 5' arm      3' arm
18987 + 7730 89 21.5 -35 NP_817772 5' arm      3' arm
18985 + 7318 90 21.5 -25 NP_817771 5' arm      3' arm
18978 + 2903 90 22.5 -22.9 NP_817765 5' arm      3' arm
18981 + 4028 90 21 -29.2 NP_817767 5' arm      3' arm
18977 + 1339 90 20.5 -24.5 NP_817763 5' arm      3' arm
18979 + 3086 79 19.5 -31.7 NP_817766 5' arm      3' arm
18984 + 6388 89 23.5 -30.5 NP_817769 5' arm      3' arm
18982 + 6116 89 23 -27.1 NP_817769 5' arm      3' arm
18986 + 7558 90 22.5 -25.5 NP_817772 5' arm      3' arm
18983 + 6224 87 21.5 -21.3 NP_817769 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.