miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566193 NC_004684.1 Mycobacteriophage Rosebush virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18997 + 14210 88 19 -20 NP_817776 5' arm      3' arm
18998 + 14347 90 19.5 -22.6 NP_817776 5' arm      3' arm
18999 + 14945 90 19.5 -19.7 NP_817777 5' arm      3' arm
19000 + 15037 87 19 -29.5 NP_817777 5' arm      3' arm
19001 + 15492 82 19 -25.3 NP_817778 5' arm      3' arm
19002 + 16484 81 20.5 -27.6 NP_817779 5' arm      3' arm
19003 + 16889 89 19 -19.4 NP_817780 5' arm      3' arm
19004 + 17975 86 23 -22.7 NP_817782 5' arm      3' arm
19005 + 18817 89 21 -23.4 NP_817783 5' arm      3' arm
19006 + 18973 90 19.5 -21.4 NP_817784 5' arm      3' arm
19007 + 20945 87 19 -22.8 NP_817788 5' arm      3' arm
19008 + 21073 90 19 -30.5 NP_817788 5' arm      3' arm
19009 + 21197 90 21 -22.5 NP_817788 5' arm      3' arm
19010 + 21971 78 21 -25.3 NP_817790 5' arm      3' arm
19011 + 22581 86 22 -24.5 NP_817790 5' arm      3' arm
19012 + 22745 85 19.5 -19.5 NP_817790 5' arm      3' arm
19013 + 22838 90 22.5 -32.1 NP_817790 5' arm      3' arm
19014 + 24498 88 22.5 -35.6 NP_817790 5' arm      3' arm
19015 + 24888 89 19.5 -30.5 NP_817790 5' arm      3' arm
19016 + 25646 84 21 -23.4 NP_817790 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.