miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566284 NC_004685.1 Mycobacteriophage Corndog virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19382 + 63392 89 21.5 -23.8 NP_817956 5' arm      3' arm
19381 + 63002 90 19.5 -22.3 NP_817955 5' arm      3' arm
19380 + 62392 89 21.5 -20.3 NP_817953 5' arm      3' arm
19539 - 62471 90 20 -21.9 NP_817953 5' arm      3' arm
19379 + 62006 87 25.5 -26.7 NP_817952 5' arm      3' arm
19538 - 61790 89 21 -22.4 NP_817951 5' arm      3' arm
19378 + 61502 90 21 -25.8 NP_817950 5' arm      3' arm
19537 - 61426 87 21 -27.1 NP_817950 5' arm      3' arm
19536 - 61090 85 21 -25.5 NP_817949 5' arm      3' arm
19377 + 61168 89 22.5 -27.8 NP_817949 5' arm      3' arm
19376 + 61065 88 19 -27.5 NP_817949 5' arm      3' arm
19375 + 60896 88 24 -24.6 NP_817949 5' arm      3' arm
19372 + 60167 90 21.5 -21.3 NP_817948 5' arm      3' arm
19373 + 60348 89 20.5 -21 NP_817948 5' arm      3' arm
19534 - 60249 78 19.5 -21.1 NP_817948 5' arm      3' arm
19535 - 60375 89 19 -23.2 NP_817948 5' arm      3' arm
19371 + 59497 89 20.5 -26.8 NP_817947 5' arm      3' arm
19368 + 58518 88 21.5 -22.9 NP_817947 5' arm      3' arm
19370 + 59381 90 21 -20 NP_817947 5' arm      3' arm
19369 + 59227 87 20 -22.1 NP_817947 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.