miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19684 - 30429 90 21 -20.6 5' arm      3' arm
19733 - 56221 79 20 -21.8 5' arm      3' arm
19690 - 33028 87 21.5 -24.7 5' arm      3' arm
19709 - 45960 85 21.5 -20.66 5' arm      3' arm
19686 - 31517 90 21 -22.2 5' arm      3' arm
19671 - 23501 90 20.5 -20.9 5' arm      3' arm
19717 - 50529 90 19.5 -20 5' arm      3' arm
19554 + 122 89 23 -26.9 NP_817974 5' arm      3' arm
19555 + 597 90 21.5 -23.6 NP_817975 5' arm      3' arm
19556 + 1319 90 22.5 -22 NP_817976 5' arm      3' arm
19559 + 3009 89 19 -21 NP_817977 5' arm      3' arm
19560 + 3257 90 20.5 -25.8 NP_817977 5' arm      3' arm
19561 + 3399 87 21.5 -20.7 NP_817977 5' arm      3' arm
19557 + 2361 86 22 -26.7 NP_817977 5' arm      3' arm
19558 + 2779 90 22 -29.7 NP_817977 5' arm      3' arm
19562 + 4560 90 20 -23.1 NP_817979 5' arm      3' arm
19642 - 5343 89 23 -20.8 NP_817980 5' arm      3' arm
19641 - 5126 89 21 -25.7 NP_817980 5' arm      3' arm
19643 - 5888 79 21 -25.72 NP_817981 5' arm      3' arm
19563 + 6341 89 22 -19.5 NP_817982 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.