miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19646 - 7619 90 23.5 -36 NP_817986 5' arm      3' arm
19565 + 7100 89 20.5 -35.4 NP_817985 5' arm      3' arm
19722 - 52168 89 23.5 -34.9 NP_955484 5' arm      3' arm
19702 - 43039 87 20.5 -34.6 NP_818048 5' arm      3' arm
19648 - 8370 88 26 -34.3 NP_817988 5' arm      3' arm
19625 + 43748 90 23.5 -32.7 NP_818049 5' arm      3' arm
19658 - 13534 89 21.5 -32.5 NP_817991 5' arm      3' arm
19573 + 11136 90 24.5 -32 NP_817990 5' arm      3' arm
19653 - 11308 88 22 -31.7 NP_817990 5' arm      3' arm
19652 - 9890 88 23 -31.5 NP_817990 5' arm      3' arm
19721 - 51713 86 24 -31.5 NP_955483 5' arm      3' arm
19731 - 55652 90 20.5 -31.1 NP_818076 5' arm      3' arm
19651 - 9193 89 21 -30.5 NP_817989 5' arm      3' arm
19657 - 13242 89 20 -30.1 NP_817991 5' arm      3' arm
19705 - 43837 89 19 -30 NP_818049 5' arm      3' arm
19558 + 2779 90 22 -29.7 NP_817977 5' arm      3' arm
19719 - 50909 87 21 -29.5 NP_955480 5' arm      3' arm
19582 + 15536 90 23 -29.1 NP_817993 5' arm      3' arm
19568 + 8840 90 19.5 -28.4 NP_817988 5' arm      3' arm
19697 - 39760 90 23 -28.3 NP_818040 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.