miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566511 NC_004687.1 Mycobacteriophage Bxz1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19871 + 103924 76 22.5 -37 5' arm      3' arm
19874 + 106214 89 19.5 -36 NP_818237 5' arm      3' arm
19914 + 131884 90 21 -35.3 5' arm      3' arm
20080 - 42537 87 19 -35.2 5' arm      3' arm
20135 - 59842 90 22 -35.1 5' arm      3' arm
19905 + 127122 90 23 -35 5' arm      3' arm
20258 - 107907 90 23.5 -34.9 NP_818239 5' arm      3' arm
19860 + 97828 86 20 -34.6 5' arm      3' arm
20137 - 60523 87 29.5 -34.1 NP_818185 5' arm      3' arm
19861 + 99289 87 24.5 -34 5' arm      3' arm
20169 - 70002 88 29.5 -33.82 NP_818197 5' arm      3' arm
19815 + 72227 83 19 -33.7 NP_818199 5' arm      3' arm
19976 - 7772 86 23 -33.3 NP_818098 5' arm      3' arm
19845 + 89885 89 20 -33.1 NP_818216 5' arm      3' arm
20044 - 26319 89 25.5 -33.1 NP_818148 5' arm      3' arm
20017 - 18514 90 25.5 -33 NP_818131 5' arm      3' arm
20072 - 38756 90 24 -32.7 NP_818162 5' arm      3' arm
20081 - 42705 89 20.5 -32.5 NP_818167 5' arm      3' arm
20402 - 155044 90 26 -32.3 NP_818300 5' arm      3' arm
19866 + 101799 90 23.5 -32.2 NP_818230 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.