miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20615 - 21134 86 19.5 -30.4 5' arm      3' arm
20737 - 96571 89 20 -24.3 5' arm      3' arm
20535 + 87866 85 19 -23.4 5' arm      3' arm
20425 + 14643 88 22 -25.7 5' arm      3' arm
20503 + 65772 90 19.5 -21.05 5' arm      3' arm
20419 + 9682 90 19 -32.9 5' arm      3' arm
20499 + 62660 89 24.5 -35.1 5' arm      3' arm
20428 + 15674 89 23.5 -22.9 5' arm      3' arm
20429 + 16375 90 23.5 -30.1 5' arm      3' arm
20749 - 103440 89 19 -21.9 5' arm      3' arm
20759 - 110569 90 23.5 -23 5' arm      3' arm
20537 + 88673 81 21.5 -28.4 5' arm      3' arm
20680 - 62749 90 19 -31.6       3' arm
20571 + 107068 88 21 -22 5' arm      3' arm
20640 - 40249 88 19.5 -26 5' arm      3' arm
20725 - 88736 90 20 -26.1 5' arm      3' arm
20604 - 16462 86 19.5 -25.7 5' arm      3' arm
20552 + 96483 89 23 -24 5' arm      3' arm
20536 + 88532 86 19.5 -21.5 5' arm      3' arm
20427 + 15559 90 22.5 -20 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.