miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20407 + 1991 86 19 -36.4 NP_818304 5' arm      3' arm
20462 + 35306 90 24 -35.6 NP_818340 5' arm      3' arm
20646 - 42736 90 23.5 -35.5 NP_818352 5' arm      3' arm
20499 + 62660 89 24.5 -35.1 5' arm      3' arm
20549 + 95353 90 22 -35 NP_818492 5' arm      3' arm
20575 - 2065 85 20 -33.6 NP_818304 5' arm      3' arm
20691 - 70990 89 19 -33.2 NP_818434 5' arm      3' arm
20419 + 9682 90 19 -32.9 5' arm      3' arm
20758 - 109679 86 21 -32.7 NP_818534 5' arm      3' arm
20479 + 44919 86 25 -32.6 NP_818356 5' arm      3' arm
20539 + 89593 90 22 -32.5 NP_818473 5' arm      3' arm
20661 - 47354 84 19.5 -32 NP_818363 5' arm      3' arm
20406 + 1788 88 23 -32 NP_818304 5' arm      3' arm
20543 + 91790 89 24 -32 NP_818477 5' arm      3' arm
20680 - 62749 90 19 -31.6       3' arm
20708 - 77103 89 23 -31.5 NP_818449 5' arm      3' arm
20701 - 74724 89 24.5 -31.4 NP_818442 5' arm      3' arm
20718 - 84486 90 22 -31.1 NP_818462 5' arm      3' arm
20591 - 10301 90 19 -31 NP_818316 5' arm      3' arm
20712 - 79724 89 19 -30.9 NP_818454 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.