miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20573 - 190 89 19 -25.8 NP_818302 5' arm      3' arm
20415 + 6262 86 19 -20.1 NP_818312 5' arm      3' arm
20416 + 8337 90 19 -24.3 NP_818314 5' arm      3' arm
20422 + 13697 90 22 -24.4 NP_818319 5' arm      3' arm
20420 + 10907 90 21.5 -21.7 NP_818316 5' arm      3' arm
20419 + 9682 90 19 -32.9 5' arm      3' arm
20421 + 11102 80 19 -24.2 NP_818316 5' arm      3' arm
20428 + 15674 89 23.5 -22.9 5' arm      3' arm
20429 + 16375 90 23.5 -30.1 5' arm      3' arm
20414 + 5842 89 19 -25.1 NP_818312 5' arm      3' arm
20413 + 5656 90 20 -20.4 NP_818312 5' arm      3' arm
20417 + 8942 90 20.5 -29.41 NP_818315 5' arm      3' arm
20405 + 1066 89 21 -22.3 NP_818303 5' arm      3' arm
20409 + 3782 86 21 -24.8 NP_818309 5' arm      3' arm
20410 + 4507 89 20.5 -20.1 NP_818312 5' arm      3' arm
20408 + 2088 88 20 -23.7 NP_818304 5' arm      3' arm
20411 + 4616 90 19.5 -20.8 NP_818312 5' arm      3' arm
20407 + 1991 86 19 -36.4 NP_818304 5' arm      3' arm
20412 + 4779 81 19 -21 NP_818312 5' arm      3' arm
20418 + 9160 89 24 -21.8 NP_818315 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.