miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20465 + 36524 90 19 -23.4 NP_818341 5' arm      3' arm
20415 + 6262 86 19 -20.1 NP_818312 5' arm      3' arm
20416 + 8337 90 19 -24.3 NP_818314 5' arm      3' arm
20494 + 58695 88 19 -24.4 NP_818398 5' arm      3' arm
20496 + 59174 89 19 -22.6 NP_818399 5' arm      3' arm
20419 + 9682 90 19 -32.9 5' arm      3' arm
20421 + 11102 80 19 -24.2 NP_818316 5' arm      3' arm
20516 + 76117 89 19 -25 NP_818445 5' arm      3' arm
20489 + 55567 90 19 -22 NP_818388 5' arm      3' arm
20414 + 5842 89 19 -25.1 NP_818312 5' arm      3' arm
20573 - 190 89 19 -25.8 NP_818302 5' arm      3' arm
20514 + 74649 87 19 -25.3 NP_818442 5' arm      3' arm
20456 + 32939 88 19 -19.4 NP_818339 5' arm      3' arm
20475 + 41262 87 19 -21.8 NP_818351 5' arm      3' arm
20509 + 70871 83 19 -22.6 NP_818434 5' arm      3' arm
20450 + 31905 88 19 -22.9 NP_818339 5' arm      3' arm
20517 + 76364 89 19 -23.1 NP_818446 5' arm      3' arm
20407 + 1991 86 19 -36.4 NP_818304 5' arm      3' arm
20412 + 4779 81 19 -21 NP_818312 5' arm      3' arm
20480 + 45373 86 19 -26.2 NP_818357 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.