miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20464 + 36186 87 24 -21.7 NP_818341 5' arm      3' arm
20463 + 36017 87 24 -19.8 NP_818341 5' arm      3' arm
20462 + 35306 90 24 -35.6 NP_818340 5' arm      3' arm
20706 - 76349 86 23.5 -20 NP_818446 5' arm      3' arm
20759 - 110569 90 23.5 -23 5' arm      3' arm
20563 + 100749 85 23.5 -22.3 NP_818505 5' arm      3' arm
20646 - 42736 90 23.5 -35.5 NP_818352 5' arm      3' arm
20470 + 37995 85 23.5 -19.4 NP_818344 5' arm      3' arm
20562 + 100033 89 23.5 -20.9 NP_818503 5' arm      3' arm
20428 + 15674 89 23.5 -22.9 5' arm      3' arm
20429 + 16375 90 23.5 -30.1 5' arm      3' arm
20745 - 101366 90 23 -29.6 NP_818506 5' arm      3' arm
20728 - 90891 87 23 -21.2 NP_818476 5' arm      3' arm
20708 - 77103 89 23 -31.5 NP_818449 5' arm      3' arm
20550 + 95904 90 23 -26.5 NP_818493 5' arm      3' arm
20678 - 61212 86 23 -26.76 NP_818403 5' arm      3' arm
20460 + 34515 90 23 -19.9 NP_818340 5' arm      3' arm
20426 + 15410 90 23 -21.3 NP_818322 5' arm      3' arm
20713 - 80062 90 23 -24.4 NP_818454 5' arm      3' arm
20552 + 96483 89 23 -24 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.