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GenBank Identifier | RefSeq Acc. | Name |
29566975 | NC_004689.1 | Mycobacteriophage Barnyard virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
20814 | + | 42951 | 74 | 19.5 | -36.2 | NP_818598 | 5' arm 3' arm | ||
20825 | + | 60573 | 90 | 24 | -35.7 | NP_818625 | 5' arm 3' arm | ||
20888 | - | 42028 | 89 | 24 | -35.5 | 5' arm 3' arm | |||
20876 | - | 36875 | 82 | 20.5 | -31.5 | 5' arm | |||
20841 | - | 11128 | 90 | 24.5 | -31.4 | NP_818557 | 3' arm | ||
20804 | + | 37353 | 85 | 22 | -30.8 | 5' arm 3' arm | |||
20920 | - | 70537 | 89 | 23 | -30.5 | 5' arm 3' arm | |||
20857 | - | 16159 | 82 | 20 | -30.4 | NP_818567 | 5' arm 3' arm | ||
20767 | + | 12935 | 87 | 23 | -29.9 | NP_818559 | 5' arm 3' arm | ||
20850 | - | 13020 | 85 | 22 | -29.9 | NP_818559 | 5' arm | ||
20894 | - | 49108 | 87 | 25.5 | -29.8 | 5' arm 3' arm | |||
20835 | - | 1775 | 90 | 21.5 | -29.5 | NP_818541 | 5' arm 3' arm | ||
20885 | - | 41324 | 90 | 25.5 | -29.3 | NP_818594 | 5' arm 3' arm | ||
20790 | + | 29552 | 89 | 22 | -29.3 | NP_818574 | 5' arm 3' arm | ||
20806 | + | 37929 | 85 | 21.5 | -29.2 | NP_818587 | 5' arm 3' arm | ||
20805 | + | 37452 | 89 | 28.5 | -28.9 | 5' arm 3' arm | |||
20848 | - | 12800 | 90 | 21 | -28.8 | NP_818559 | 3' arm | ||
20887 | - | 41932 | 87 | 24 | -28.3 | NP_818594 | 5' arm 3' arm | ||
20918 | - | 69066 | 90 | 26 | -28.3 | NP_818646 | 5' arm 3' arm | ||
20777 | + | 19986 | 88 | 21 | -28.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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