miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27311175 NC_004456.1 Vibrio harveyi bacteriophage VHML

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17515 - 38512 90 20 -28.3 5' arm      3' arm
17501 - 13348 84 21.5 -25.2 NP_758910 5' arm      3' arm
17500 - 6862 87 20 -22.9 NP_758899 5' arm      3' arm
17498 - 2700 90 19.5 -21.4 NP_758895 5' arm      3' arm
17513 - 35590 90 19.5 -22 NP_758934 5' arm      3' arm
17512 - 32297 89 22.5 -23.6 5' arm      3' arm
17509 - 28023 89 24.5 -25 NP_758928 5' arm      3' arm
17510 - 29036 89 19 -21.9 5' arm      3' arm
17506 - 20681 90 19 -20 NP_758917 5' arm      3' arm
17503 - 17870 89 22.5 -26.4 NP_758915 5' arm      3' arm
17507 - 20958 79 19.5 -27 NP_758917 5' arm      3' arm
17516 - 40363 90 19.5 -21.1 NP_758942 5' arm      3' arm
17505 - 19934 88 21 -21.1 NP_758917 5' arm      3' arm
17517 - 41327 87 19 -24.66 5' arm      3' arm
17508 - 22793 90 23.5 -22.9 NP_758920 5' arm      3' arm
17504 - 18474 89 20.5 -27.3 NP_758916 5' arm      3' arm
17499 - 4260 88 20 -23.07 NP_758897 5' arm      3' arm
17514 - 35788 89 21.5 -25.2 NP_758934 5' arm      3' arm
17511 - 30263 89 20 -23.6 NP_758930 5' arm      3' arm
17502 - 15903 89 23 -25.2 NP_758914 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.