miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27311175 NC_004456.1 Vibrio harveyi bacteriophage VHML

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17503 - 17870 89 22.5 -26.4 NP_758915 5' arm      3' arm
17504 - 18474 89 20.5 -27.3 NP_758916 5' arm      3' arm
17477 + 19288 89 20 -20.5 NP_758916 5' arm      3' arm
17506 - 20681 90 19 -20 NP_758917 5' arm      3' arm
17481 + 20739 86 20 -20.8 NP_758917 5' arm      3' arm
17505 - 19934 88 21 -21.1 NP_758917 5' arm      3' arm
17507 - 20958 79 19.5 -27 NP_758917 5' arm      3' arm
17479 + 20158 85 19.5 -25.6 NP_758917 5' arm      3' arm
17478 + 19709 87 20.5 -20.9 NP_758917 5' arm      3' arm
17480 + 20422 90 19.5 -20.7 NP_758917 5' arm      3' arm
17508 - 22793 90 23.5 -22.9 NP_758920 5' arm      3' arm
17484 + 25442 90 22.5 -20.9 NP_758925 5' arm      3' arm
17483 + 25325 87 24 -26.9 NP_758925 5' arm      3' arm
17485 + 26753 84 21 -23.4 NP_758927 5' arm      3' arm
17486 + 27501 90 21.5 -20.8 NP_758928 5' arm      3' arm
17487 + 28196 89 21.5 -19.8 NP_758928 5' arm      3' arm
17509 - 28023 89 24.5 -25 NP_758928 5' arm      3' arm
17511 - 30263 89 20 -23.6 NP_758930 5' arm      3' arm
17488 + 34178 89 21.5 -25.2 NP_758934 5' arm      3' arm
17491 + 35623 83 20 -22.3 NP_758934 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.