miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27311175 NC_004456.1 Vibrio harveyi bacteriophage VHML

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17508 - 22793 90 23.5 -22.9 NP_758920 5' arm      3' arm
17509 - 28023 89 24.5 -25 NP_758928 5' arm      3' arm
17510 - 29036 89 19 -21.9 5' arm      3' arm
17511 - 30263 89 20 -23.6 NP_758930 5' arm      3' arm
17512 - 32297 89 22.5 -23.6 5' arm      3' arm
17513 - 35590 90 19.5 -22 NP_758934 5' arm      3' arm
17514 - 35788 89 21.5 -25.2 NP_758934 5' arm      3' arm
17515 - 38512 90 20 -28.3 5' arm      3' arm
17516 - 40363 90 19.5 -21.1 NP_758942 5' arm      3' arm
17517 - 41327 87 19 -24.66 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.