miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17058 + 26168 71 20 -22 5' arm      3' arm
17211 - 44133 87 22.5 -22.8 5' arm      3' arm
17016 + 8845 90 26 -28.6 5' arm      3' arm
17103 + 47820 89 21 -23.9 5' arm      3' arm
17120 - 5782 87 20 -28.9 5' arm      3' arm
17156 - 18802 88 19.5 -20.7 5' arm      3' arm
17144 - 13690 90 21 -27.7 5' arm      3' arm
17201 - 40668 89 21.5 -21.6 5' arm      3' arm
17045 + 22000 90 19 -20.9 5' arm      3' arm
17036 + 16828 90 19.5 -21.7 5' arm      3' arm
16993 + 901 90 23 -25.6 5' arm      3' arm
17007 + 5694 89 21 -30.9 5' arm      3' arm
17066 + 29668 88 23 -29.2 5' arm      3' arm
17105 - 731 90 19 -20.3 NP_705629 5' arm      3' arm
16992 + 677 86 20.5 -27.2 NP_705629 5' arm      3' arm
17106 - 851 87 21 -31.4 NP_705629 5' arm      3' arm
16991 + 238 90 22 -21.1 NP_705629 5' arm      3' arm
16990 + 96 87 23.5 -21.5 NP_705629 5' arm      3' arm
16996 + 1628 89 20 -26.9 NP_705630 5' arm      3' arm
17108 - 1609 90 20.5 -21.7 NP_705630 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.