miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17069 + 31941 89 19 -20.1 NP_705669 5' arm      3' arm
17052 + 23648 88 19 -25.9 NP_705657 5' arm      3' arm
17100 + 46018 81 19 -27.6 NP_705685 5' arm      3' arm
16998 + 2046 90 19 -22.6 NP_705631 5' arm      3' arm
17080 + 36303 83 19 -25 NP_705674 5' arm      3' arm
17102 + 47727 90 19 -20.6 NP_705688 5' arm      3' arm
17165 - 23966 87 19 -23.5 NP_705658 5' arm      3' arm
17089 + 40325 88 19 -24.04 YP_022747 5' arm      3' arm
17022 + 10513 89 19 -21 NP_705641 5' arm      3' arm
17151 - 17309 90 19 -24.1 NP_705646 5' arm      3' arm
17045 + 22000 90 19 -20.9 5' arm      3' arm
17040 + 20183 88 19 -20.01 NP_705652 5' arm      3' arm
17105 - 731 90 19 -20.3 NP_705629 5' arm      3' arm
17180 - 29206 88 19 -23.2 NP_705666 5' arm      3' arm
17216 - 46227 88 19 -25.7 NP_705686 5' arm      3' arm
17171 - 26343 89 19 -21.4 NP_705661 5' arm      3' arm
17196 - 38511 82 19 -19.9 NP_705675 5' arm      3' arm
17173 - 26952 88 19 -20.6 NP_705662 5' arm      3' arm
17155 - 18536 90 19 -25.4 NP_705647 5' arm      3' arm
17174 - 27260 89 19 -29.2 NP_705663 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.