miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23201 + 8060 88 19 -20.7 NP_943787 5' arm      3' arm
23514 - 64880 78 19 -26.1 NP_943867 5' arm      3' arm
23226 + 18880 89 19 -24.3 NP_943803 5' arm      3' arm
23418 - 25443 86 19 -23.3 NP_943806 5' arm      3' arm
23271 + 39475 89 19 -21.1 NP_943824 5' arm      3' arm
23410 - 22246 87 19 -20.1 NP_943806 5' arm      3' arm
23185 + 350 90 19 -23.4 NP_943779 5' arm      3' arm
23356 - 1349 87 19 -24.3 NP_943780 5' arm      3' arm
23227 + 19018 88 19 -26.1 5' arm      3' arm
23402 - 18695 89 19 -25.2 NP_943802 5' arm      3' arm
23314 + 54712 90 19 -24.6 NP_943840 5' arm      3' arm
23495 - 56958 90 19 -23.2 NP_943844 5' arm      3' arm
23298 + 49655 90 19 -23 NP_943837 5' arm      3' arm
23489 - 53166 87 19 -23.8 NP_943839 5' arm      3' arm
23207 + 11113 89 19.5 -19.8 NP_943790 5' arm      3' arm
23264 + 36678 85 19.5 -22.8 NP_943818 5' arm      3' arm
23507 - 60519 90 19.5 -21.2 NP_943853 5' arm      3' arm
23277 + 41634 88 19.5 -24.1 NP_943827 5' arm      3' arm
23513 - 64666 89 19.5 -27 NP_943866 5' arm      3' arm
23213 + 12453 89 19.5 -21.8 NP_943792 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.