miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638403 NC_005259.1 Mycobacteriophage PG1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23223 + 16880 89 20 -21.1 NP_943799 5' arm      3' arm
23397 - 17445 87 19.5 -23.1 NP_943800 5' arm      3' arm
23398 - 17546 89 20 -27.1 NP_943800 5' arm      3' arm
23399 - 17742 85 21.5 -27.2 NP_943800 5' arm      3' arm
23224 + 17960 90 21 -24.2 NP_943801 5' arm      3' arm
23400 - 18253 90 21.5 -24.6 NP_943801 5' arm      3' arm
23225 + 18388 87 19 -23.9 NP_943802 5' arm      3' arm
23401 - 18501 87 20 -25.1 NP_943802 5' arm      3' arm
23402 - 18695 89 19 -25.2 NP_943802 5' arm      3' arm
23226 + 18880 89 19 -24.3 NP_943803 5' arm      3' arm
23404 - 19393 90 21 -19.7 NP_943804 5' arm      3' arm
23405 - 19663 88 20 -23.4 NP_943804 5' arm      3' arm
23403 - 19241 89 24.5 -29.9 NP_943804 5' arm      3' arm
23228 + 19963 90 20 -19.5 NP_943805 5' arm      3' arm
23229 + 20080 87 22 -19.4 NP_943805 5' arm      3' arm
23230 + 20891 89 19.5 -23.6 NP_943806 5' arm      3' arm
23241 + 25903 90 21 -23.3 NP_943806 5' arm      3' arm
23238 + 24143 90 21.5 -28 NP_943806 5' arm      3' arm
23239 + 24896 90 19.5 -23.1 NP_943806 5' arm      3' arm
23242 + 26101 90 21 -23.7 NP_943806 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.