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GenBank Identifier | RefSeq Acc. | Name |
28867239 | NC_004579.1 | Mink astrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
17700 | + | 75 | 90 | 23.5 | -27.6 | NP_795334 | 5' arm 3' arm | ||
17701 | + | 172 | 83 | 20 | -22.4 | NP_795334 | 5' arm 3' arm | ||
17702 | + | 797 | 82 | 20 | -22 | NP_853539 | 5' arm 3' arm | ||
17703 | + | 2889 | 88 | 21.5 | -24.1 | NP_853539 | 5' arm 3' arm | ||
17704 | + | 5007 | 89 | 21.5 | -23.2 | NP_795336 | 5' arm 3' arm | ||
17705 | - | 403 | 90 | 20.5 | -22.9 | NP_795334 | 5' arm 3' arm | ||
17706 | - | 2568 | 86 | 22.5 | -25.4 | NP_853539 | 5' arm 3' arm | ||
17707 | - | 6303 | 80 | 19 | -23.5 | NP_795336 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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