miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
30018252 NC_004725.1 Cucumber Bulgarian virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20971 + 1260 89 22.5 -23 NP_835253 5' arm      3' arm
20970 + 441 90 23 -22.5 NP_835254 5' arm      3' arm
20972 + 1572 85 20.5 -21 NP_835253 5' arm      3' arm
20974 - 3574 89 19 -20.97 NP_835255 5' arm      3' arm
20973 + 1961 90 19.5 -19.9 NP_835253 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.