miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639923 NC_005260.1 Bacteriophage Aeh1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23529 - 16547 90 19.5 -20.6 NP_943897 5' arm      3' arm
23556 - 230926 89 27 -26.4 5' arm      3' arm
23554 - 228400 89 27 -31.8 NP_944223 5' arm      3' arm
23555 - 229800 90 19 -19.7 NP_944225 5' arm      3' arm
23553 - 222478 89 22.5 -23.9 NP_944215 5' arm      3' arm
23552 - 213239 90 23.5 -26.5 NP_944212 5' arm      3' arm
23551 - 210360 87 20.5 -21.2 NP_944211 5' arm      3' arm
23550 - 204220 90 23 -19.96 NP_944201 5' arm      3' arm
23549 - 201685 87 19 -20.2 NP_944197 5' arm      3' arm
23528 + 222412 90 20.5 -19.9 NP_944215 5' arm      3' arm
23527 + 187645 88 19.5 -26.5 NP_944165 5' arm      3' arm
23526 + 182668 82 20.5 -27.5 5' arm      3' arm
23518 + 17597 88 20 -21.7 5' arm      3' arm
23519 + 19828 90 20 -19.7 NP_943902 5' arm      3' arm
23520 + 49643 90 22.5 -20.9 5' arm      3' arm
23521 + 127551 90 21 -20.8 NP_944085 5' arm      3' arm
23522 + 134442 85 22 -23.8 NP_944090 5' arm      3' arm
23523 + 152534 86 25 -20 NP_944106 5' arm      3' arm
23524 + 160215 90 20.5 -25.9 5' arm      3' arm
23525 + 162971 88 23 -28.5 NP_944118 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.