miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
30271926 NC_004718.3 SARS coronavirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20952 - 29336 88 20.5 -24.5 NP_828858 5' arm      3' arm
20951 + 26784 89 21.5 -20.1 NP_828855 5' arm      3' arm
20950 + 20195 90 21 -20.1 NP_828849 5' arm      3' arm
20949 + 14067 84 22.5 -21.6 NP_828849 5' arm      3' arm
20948 + 9318 89 23 -20.1 NP_828850 5' arm      3' arm
20947 + 3012 74 21 -23 NP_828849 5' arm      3' arm
20946 + 327 84 19 -24.4 NP_828850 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.