miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
30065704 NC_004745.1 Bacteriophage L-413C

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
21058 - 2018 82 19.5 -24.9 NP_839851 5' arm      3' arm
21045 + 9693 89 20.5 -25.6 NP_839863 5' arm      3' arm
21049 + 17202 89 20 -19.8 NP_839870 5' arm      3' arm
21048 + 16854 90 19.5 -27.3 NP_839870 5' arm      3' arm
21053 + 20400 90 26 -28.1 NP_839874 5' arm      3' arm
21051 + 19274 90 24.5 -19.99 NP_839874 5' arm      3' arm
21052 + 20285 87 21.5 -25 NP_839874 5' arm      3' arm
21050 + 18952 90 19.5 -26.3 NP_839874 5' arm      3' arm
21055 + 26935 88 20.5 -20.9 NP_839887 5' arm      3' arm
21047 + 11404 81 21 -22.3 NP_839866 5' arm      3' arm
21044 + 9583 90 22 -23.9 NP_839863 5' arm      3' arm
21046 + 10612 89 24 -27 NP_839865 5' arm      3' arm
21037 + 4209 88 20 -25.6 NP_839853 5' arm      3' arm
21035 + 121 89 19.5 -19.4 5' arm      3' arm
21042 + 7727 86 25 -25.5 NP_839859 5' arm      3' arm
21040 + 6877 89 23 -23.4 NP_839857 5' arm      3' arm
21038 + 5349 88 22 -23.9 NP_839854 5' arm      3' arm
21039 + 6772 89 22 -22.6 NP_839857 5' arm      3' arm
21041 + 7341 90 21 -20.8 NP_839858 5' arm      3' arm
21043 + 8934 90 20 -26.7 NP_839862 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.