miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
39163648 NC_005287.1 Johnsongrass chlorotic stripe mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24996 - 4124 85 20.5 -20.3 NP_945131 5' arm      3' arm
24995 - 2409 84 20 -25.8 NP_945128 5' arm      3' arm
24994 - 1432 88 19 -25.7 NP_945128 5' arm      3' arm
24993 + 3410 87 20.5 -24.9 NP_945130 5' arm      3' arm
24992 + 2940 89 20.5 -23.56 NP_945130 5' arm      3' arm
24991 + 2534 90 19.5 -22.3 NP_945130 5' arm      3' arm
24990 + 1360 90 19.5 -32.1 NP_945128 5' arm      3' arm
24989 + 876 90 19.5 -21.17 NP_945128 5' arm      3' arm
24988 + 784 90 20 -30.8 NP_945128 5' arm      3' arm
24987 + 206 90 24.5 -30.3 NP_945129 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.