miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21883	-	21202	88	22	-23.3	NP_858973		5' arm      3' arm
21866	+	24319	90	19.5	-23.6	NP_858978		5' arm      3' arm
21885	-	24408	90	21	-29.2	NP_858978		5' arm      3' arm
21888	-	27018	90	22	-19.5	NP_858979		5' arm      3' arm
21887	-	26069	89	22	-21.2	NP_858979		5' arm      3' arm
21868	+	25532	89	21	-22.8	NP_858979		5' arm      3' arm
21867	+	25386	88	21.5	-22.62	NP_858979		5' arm      3' arm
21889	-	27226	89	19	-24.2	NP_858979		5' arm      3' arm
21890	-	27805	83	20	-24.4	NP_858980		5' arm      3' arm
21869	+	28763	90	20	-19.5	NP_858982		5' arm      3' arm
21891	-	29950	88	19	-27	NP_858984		5' arm      3' arm
21893	-	33505	90	19.5	-20.2	NP_858986		5' arm      3' arm
21892	-	33003	84	20.5	-20.1	NP_858986		5' arm      3' arm
21894	-	34680	88	19.5	-26.6	NP_858988		5' arm      3' arm
21870	+	35241	89	21.5	-20.6	NP_858989		5' arm      3' arm
21896	-	35384	87	21	-20.5	NP_858989		5' arm      3' arm
21897	-	35750	90	21	-20.2	NP_858989		5' arm      3' arm
21872	+	36791	90	21.5	-20.3	NP_858991		5' arm      3' arm
21898	-	36622	89	20	-22.5	NP_858991		5' arm      3' arm
21871	+	36607	89	20.5	-20	NP_858991		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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