miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38640309 NC_005262.1 Burkholderia cepacia phage Bcep22

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23887 + 9180 89 22.5 -27.9 5' arm      3' arm
23867 + 3308 83 20 -27.3 NP_944235 5' arm      3' arm
23868 + 3557 88 20 -22.54 NP_944235 5' arm      3' arm
23872 + 4657 90 20 -29.3 NP_944237 5' arm      3' arm
23871 + 4438 90 19 -22.6 5' arm      3' arm
23875 + 5292 90 24 -29.1 NP_944238 5' arm      3' arm
23877 + 5831 90 22.5 -26.5 NP_944238 5' arm      3' arm
23880 + 7101 88 22.5 -27.1 5' arm      3' arm
23885 + 8786 89 22.5 -20.3 NP_944243 5' arm      3' arm
23859 + 981 86 20 -19.6 NP_944233 5' arm      3' arm
23870 + 3848 85 20.5 -22.5 NP_944235 5' arm      3' arm
23873 + 4802 89 21 -26.5 NP_944237 5' arm      3' arm
23864 + 2130 88 23 -21.2 NP_944234 5' arm      3' arm
23869 + 3648 90 22.5 -25.6 NP_944235 5' arm      3' arm
23858 + 116 90 22 -24.7 NP_944231 5' arm      3' arm
23860 + 1245 89 22 -21.1 5' arm      3' arm
23863 + 1963 90 22 -27.9 NP_944234 5' arm      3' arm
23861 + 1470 87 21 -25.8 NP_944234 5' arm      3' arm
23865 + 2466 89 21 -23.44 NP_944235 5' arm      3' arm
23866 + 2847 89 21 -24.1 NP_944235 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.