miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
34610128 NC_005091.1 Burkholderia cepacia phage BcepNazgul

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22700 - 30151 90 22 -36 5' arm      3' arm
22692 - 27344 77 21.5 -35.8 5' arm      3' arm
22567 + 13870 90 20.5 -34.8 5' arm      3' arm
22702 - 31911 90 20.5 -34 5' arm      3' arm
22646 + 52118 89 24 -33.7 5' arm      3' arm
22608 + 32185 90 22.5 -32.5 5' arm      3' arm
22640 + 50962 90 19 -32.5 5' arm      3' arm
22690 - 26102 89 26 -32.2 5' arm      3' arm
22708 - 36383 90 19.5 -31.6 5' arm      3' arm
22729 - 53058 89 25 -31.2 5' arm      3' arm
22579 + 21231 90 21 -30.7 5' arm      3' arm
22625 + 39845 88 26 -30.6 5' arm      3' arm
22617 + 35639 88 19.5 -30.4 5' arm      3' arm
22602 + 30062 89 20.5 -30.2 5' arm      3' arm
22676 - 16096 89 23 -29.2 5' arm      3' arm
22688 - 25311 89 21 -29.1 5' arm      3' arm
22641 + 51232 90 19.5 -28.9 5' arm      3' arm
22669 - 10877 89 19 -28.9 5' arm      3' arm
22575 + 18736 90 22.5 -28.6 5' arm      3' arm
22595 + 27698 90 21.5 -28.6 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.