miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707890 NC_005284.1 Bacteriophage phi1026b

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24950 - 35564 89 19 -27.4 5' arm      3' arm
24865 + 31599 87 20.5 -21.1 5' arm      3' arm
24932 - 22108 85 22 -36.8 5' arm      3' arm
24942 - 28223 89 19 -21.8 5' arm      3' arm
24919 - 11869 90 20.5 -21.2 5' arm      3' arm
24906 - 5830 90 20 -20.1 5' arm      3' arm
24870 + 34296 87 22.5 -20.5 5' arm      3' arm
24876 + 37819 89 22 -26.1 5' arm      3' arm
24953 - 39698 80 22 -22.8 5' arm      3' arm
24951 - 36677 84 19 -19.9 5' arm      3' arm
24903 - 1215 88 23.5 -32.1 NP_945032 5' arm      3' arm
24807 + 901 86 23 -22.2 NP_945032 5' arm      3' arm
24806 + 562 87 20.5 -20.3 NP_945032 5' arm      3' arm
24808 + 1103 89 20 -23.2 NP_945032 5' arm      3' arm
24809 + 2630 87 19.5 -23.3 NP_945033 5' arm      3' arm
24810 + 3992 89 19.5 -24.2 NP_945034 5' arm      3' arm
24904 - 4071 88 21.5 -21.9 NP_945034 5' arm      3' arm
24811 + 4657 90 21 -21.2 NP_945035 5' arm      3' arm
24905 - 4859 90 21.5 -23.6 NP_945035 5' arm      3' arm
24907 - 5967 89 21.5 -20.2 NP_945037 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.