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| GenBank Identifier | RefSeq Acc. | Name |
| 46402086 | NC_005857.1 | Bacteriophage phiKO2 virion |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27357 | + | 38380 | 88 | 19.5 | -23.7 | 5' arm 3' arm | |||
| 27354 | + | 32664 | 90 | 20 | -24.39 | 5' arm 3' arm | |||
| 27377 | - | 32762 | 87 | 21.5 | -24.3 | 5' arm 3' arm | |||
| 27387 | - | 48652 | 90 | 19 | -30.7 | 5' arm 3' arm | |||
| 27375 | - | 29184 | 87 | 25 | -36.3 | 5' arm 3' arm | |||
| 27383 | - | 45595 | 86 | 19.5 | -28.9 | 5' arm 3' arm | |||
| 27364 | - | 9429 | 89 | 20.5 | -22.8 | 5' arm 3' arm | |||
| 27376 | - | 31321 | 90 | 21 | -25 | 5' arm 3' arm | |||
| 27358 | - | 2044 | 88 | 19.5 | -21.3 | YP_006582 | 5' arm 3' arm | ||
| 27332 | + | 2271 | 88 | 19.5 | -28.6 | YP_006583 | 5' arm 3' arm | ||
| 27333 | + | 2580 | 88 | 19.5 | -30.3 | YP_006584 | 5' arm 3' arm | ||
| 27334 | + | 3148 | 90 | 19.5 | -23.9 | YP_006584 | 5' arm 3' arm | ||
| 27335 | + | 4423 | 90 | 20.5 | -23.5 | YP_006585 | 5' arm 3' arm | ||
| 27359 | - | 4043 | 86 | 20 | -21.7 | YP_006585 | 5' arm 3' arm | ||
| 27360 | - | 5121 | 88 | 20 | -26.7 | YP_006586 | 5' arm 3' arm | ||
| 27361 | - | 5764 | 78 | 21 | -20.9 | YP_006586 | 5' arm 3' arm | ||
| 27362 | - | 6622 | 89 | 19.5 | -22.3 | YP_006588 | 5' arm 3' arm | ||
| 27336 | + | 6844 | 90 | 20 | -25.6 | YP_006589 | 5' arm 3' arm | ||
| 27337 | + | 7157 | 89 | 21.5 | -20.4 | YP_006590 | 5' arm 3' arm | ||
| 27363 | - | 7245 | 89 | 19.5 | -19.7 | YP_006590 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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