miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
46402086 NC_005857.1 Bacteriophage phiKO2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27375 - 29184 87 25 -36.3 5' arm      3' arm
27387 - 48652 90 19 -30.7 5' arm      3' arm
27333 + 2580 88 19.5 -30.3 YP_006584 5' arm      3' arm
27338 + 8086 83 21 -29.5 YP_006592 5' arm      3' arm
27383 - 45595 86 19.5 -28.9 5' arm      3' arm
27332 + 2271 88 19.5 -28.6 YP_006583 5' arm      3' arm
27343 + 16544 89 19 -27.2 YP_006601 5' arm      3' arm
27356 + 36936 90 20.5 -27.1 YP_006615 5' arm      3' arm
27353 + 32499 89 19 -27 YP_006610 5' arm      3' arm
27389 - 50237 89 23 -26.8 YP_006642 5' arm      3' arm
27360 - 5121 88 20 -26.7 YP_006586 5' arm      3' arm
27341 + 13897 87 21 -25.8 YP_006598 5' arm      3' arm
27336 + 6844 90 20 -25.6 YP_006589 5' arm      3' arm
27339 + 9244 81 19 -25.3 YP_006595 5' arm      3' arm
27386 - 47920 86 19 -25.1 YP_006635 5' arm      3' arm
27376 - 31321 90 21 -25 5' arm      3' arm
27354 + 32664 90 20 -24.39 5' arm      3' arm
27377 - 32762 87 21.5 -24.3 5' arm      3' arm
27350 + 26735 82 23 -24.29 YP_006604 5' arm      3' arm
27342 + 16367 88 19.5 -24.2 YP_006601 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.