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GenBank Identifier | RefSeq Acc. | Name |
46402086 | NC_005857.1 | Bacteriophage phiKO2 virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
27375 | - | 29184 | 87 | 25 | -36.3 | 5' arm 3' arm | |||
27387 | - | 48652 | 90 | 19 | -30.7 | 5' arm 3' arm | |||
27333 | + | 2580 | 88 | 19.5 | -30.3 | YP_006584 | 5' arm 3' arm | ||
27338 | + | 8086 | 83 | 21 | -29.5 | YP_006592 | 5' arm 3' arm | ||
27383 | - | 45595 | 86 | 19.5 | -28.9 | 5' arm 3' arm | |||
27332 | + | 2271 | 88 | 19.5 | -28.6 | YP_006583 | 5' arm 3' arm | ||
27343 | + | 16544 | 89 | 19 | -27.2 | YP_006601 | 5' arm 3' arm | ||
27356 | + | 36936 | 90 | 20.5 | -27.1 | YP_006615 | 5' arm 3' arm | ||
27353 | + | 32499 | 89 | 19 | -27 | YP_006610 | 5' arm 3' arm | ||
27389 | - | 50237 | 89 | 23 | -26.8 | YP_006642 | 5' arm 3' arm | ||
27360 | - | 5121 | 88 | 20 | -26.7 | YP_006586 | 5' arm 3' arm | ||
27341 | + | 13897 | 87 | 21 | -25.8 | YP_006598 | 5' arm 3' arm | ||
27336 | + | 6844 | 90 | 20 | -25.6 | YP_006589 | 5' arm 3' arm | ||
27339 | + | 9244 | 81 | 19 | -25.3 | YP_006595 | 5' arm 3' arm | ||
27386 | - | 47920 | 86 | 19 | -25.1 | YP_006635 | 5' arm 3' arm | ||
27376 | - | 31321 | 90 | 21 | -25 | 5' arm 3' arm | |||
27354 | + | 32664 | 90 | 20 | -24.39 | 5' arm 3' arm | |||
27377 | - | 32762 | 87 | 21.5 | -24.3 | 5' arm 3' arm | |||
27350 | + | 26735 | 82 | 23 | -24.29 | YP_006604 | 5' arm 3' arm | ||
27342 | + | 16367 | 88 | 19.5 | -24.2 | YP_006601 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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