miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38707974 NC_005285.1 Pelargonium necrotic spot virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24976 + 1465 88 19 -25.3 NP_945114 5' arm      3' arm
24978 - 1160 90 19.5 -28.7 NP_945114 5' arm      3' arm
24974 + 1071 90 20 -26.7 NP_945114 5' arm      3' arm
24975 + 1373 88 21 -23.6 NP_945114 5' arm      3' arm
24977 + 2461 83 21.5 -26.6 NP_945114 5' arm      3' arm
24979 - 1622 89 22 -24.2 NP_945114 5' arm      3' arm
24973 + 330 82 26 -28.8 NP_945115 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.