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GenBank Identifier | RefSeq Acc. | Name |
48843719 | NC_005902.1 | Lymphocystis disease virus - isolate China |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28284 | - | 80891 | 89 | 28.5 | -28.2 | YP_073614 | 5' arm 3' arm | ||
28282 | - | 78900 | 90 | 26.5 | -22.2 | 5' arm 3' arm | |||
28285 | - | 81255 | 89 | 26 | -20.31 | 5' arm 3' arm | |||
28281 | - | 71829 | 89 | 24.5 | -32 | YP_073602 | 5' arm 3' arm | ||
28280 | - | 65896 | 90 | 28 | -23.8 | 5' arm 3' arm | |||
28269 | + | 167305 | 88 | 26 | -32.9 | 5' arm 3' arm | |||
28270 | + | 170798 | 89 | 34.5 | -27.9 | YP_073725 | 5' arm 3' arm | ||
28268 | + | 161992 | 90 | 28.5 | -27.7 | 5' arm 3' arm | |||
28267 | + | 155061 | 81 | 24.5 | -27.26 | YP_073703 | 5' arm 3' arm | ||
28264 | + | 125087 | 90 | 25.5 | -24.5 | YP_073671 | 5' arm 3' arm | ||
28262 | + | 113066 | 89 | 20 | -26.3 | YP_073659 | 5' arm 3' arm | ||
28263 | + | 113227 | 90 | 21 | -27.4 | YP_073659 | 5' arm 3' arm | ||
28261 | + | 80803 | 90 | 28 | -29.8 | YP_073614 | 5' arm 3' arm | ||
28260 | + | 79495 | 90 | 38 | -29.04 | 5' arm 3' arm | |||
28258 | + | 65808 | 88 | 30 | -19.5 | 5' arm 3' arm | |||
28257 | + | 58370 | 89 | 25.5 | -26.3 | 5' arm 3' arm | |||
28255 | + | 28970 | 83 | 23 | -27.3 | 5' arm 3' arm | |||
28254 | + | 13184 | 90 | 26.5 | -37.04 | 5' arm 3' arm | |||
28253 | + | 8281 | 89 | 26 | -21.3 | 5' arm 3' arm | |||
28252 | + | 6243 | 90 | 29.5 | -22.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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