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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6923 | - | 37981 | 89 | 23 | -36.9 | NP_046203 | 5' arm 3' arm | ||
| 6774 | + | 42701 | 90 | 23 | -36.8 | NP_046209 | 5' arm 3' arm | ||
| 6794 | + | 61927 | 90 | 28.5 | -36.5 | NP_046229 | 5' arm 3' arm | ||
| 6816 | + | 75335 | 89 | 30 | -33.4 | NP_046248 | 5' arm 3' arm | ||
| 7004 | - | 108827 | 86 | 22 | -32.9 | NP_046285 | 5' arm 3' arm | ||
| 6990 | - | 98028 | 90 | 22 | -32.3 | NP_046275 | 5' arm 3' arm | ||
| 6860 | + | 115863 | 85 | 19 | -32.3 | NP_046292 | 5' arm 3' arm | ||
| 7018 | - | 125225 | 90 | 21.5 | -32.2 | NP_046302 | 5' arm 3' arm | ||
| 6745 | + | 19112 | 89 | 19 | -32.2 | NP_046178 | 5' arm 3' arm | ||
| 6919 | - | 34380 | 88 | 21.5 | -32.1 | 5' arm 3' arm | |||
| 6971 | - | 77627 | 89 | 19.5 | -32 | NP_046251 | 5' arm 3' arm | ||
| 6734 | + | 10961 | 89 | 24 | -31.9 | NP_046170 | 5' arm 3' arm | ||
| 6855 | + | 111186 | 83 | 22 | -31.6 | NP_046287 | 5' arm 3' arm | ||
| 6938 | - | 47772 | 89 | 20.5 | -31.5 | NP_046214 | 5' arm 3' arm | ||
| 6813 | + | 73931 | 90 | 21 | -31.3 | NP_046247 | 5' arm 3' arm | ||
| 6803 | + | 69057 | 84 | 20.5 | -31.1 | NP_046242 | 5' arm 3' arm | ||
| 6941 | - | 51995 | 90 | 21.5 | -30.8 | NP_046221 | 5' arm 3' arm | ||
| 6754 | + | 29089 | 89 | 20.5 | -30.7 | NP_046191 | 5' arm 3' arm | ||
| 6968 | - | 74548 | 87 | 20.5 | -30.7 | NP_046247 | 5' arm 3' arm | ||
| 6934 | - | 45331 | 89 | 20 | -30.7 | NP_046210 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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