miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
11038431 NC_001875.2 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6747 + 24208 88 21 -25.6 NP_046186 5' arm      3' arm
6748 + 25964 90 23 -22.9 NP_046188 5' arm      3' arm
6749 + 26446 90 24.5 -24.7 NP_046188 5' arm      3' arm
6750 + 26548 89 19.5 -22.1 NP_046188 5' arm      3' arm
6751 + 26800 90 19 -23.8 NP_046188 5' arm      3' arm
6752 + 26967 90 23.5 -23.9 NP_046188 5' arm      3' arm
6753 + 27308 87 21.5 -22.9 NP_046188 5' arm      3' arm
6754 + 29089 89 20.5 -30.7 NP_046191 5' arm      3' arm
6755 + 29520 79 21.5 -23.2 NP_046191 5' arm      3' arm
6756 + 30508 80 22 -21.6 5' arm      3' arm
6757 + 30882 90 21 -22.5 NP_046193 5' arm      3' arm
6758 + 33205 90 20.5 -23.7 NP_046197 5' arm      3' arm
6759 + 33746 90 24 -24.5 NP_046197 5' arm      3' arm
6760 + 35029 90 21.5 -24.9 NP_046199 5' arm      3' arm
6761 + 35658 88 20 -24.3 NP_046200 5' arm      3' arm
6762 + 36587 89 20 -23.8 NP_046201 5' arm      3' arm
6763 + 37230 90 20 -20 NP_046202 5' arm      3' arm
6764 + 37698 88 21 -26.5 NP_046203 5' arm      3' arm
6765 + 38336 89 21 -22.8 NP_046203 5' arm      3' arm
6766 + 39246 88 23 -29.6 NP_046205 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.