miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45429984 NC_005809.1 Bordetella phage BIP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26874 + 19800 88 21.5 -31.6 NP_996628 5' arm      3' arm
26875 + 19919 85 19.5 -19.6 NP_996628 5' arm      3' arm
26876 + 20013 88 20.5 -27.6 NP_996628 5' arm      3' arm
26877 + 20254 89 26 -23.1 NP_996628 5' arm      3' arm
26878 + 20612 86 20 -26.5 5' arm      3' arm
26879 + 21064 88 22 -20.4 NP_996631 5' arm      3' arm
26880 + 21397 90 19.5 -20.1 NP_996631 5' arm      3' arm
26881 + 21763 89 20.5 -21.1 NP_996631 5' arm      3' arm
26882 + 21962 86 19 -23.4 NP_996631 5' arm      3' arm
26883 + 22059 90 23 -37.4 NP_996631 5' arm      3' arm
26884 + 22325 90 20.5 -21.3 NP_996631 5' arm      3' arm
26885 + 22667 89 21.5 -27.2 NP_996631 5' arm      3' arm
26886 + 22874 89 20 -26.2 NP_996632 5' arm      3' arm
26887 + 23940 90 21.5 -25.3 NP_996634 5' arm      3' arm
26888 + 24501 89 20 -22.3 NP_996635 5' arm      3' arm
26889 + 24594 90 23 -24.2 NP_996635 5' arm      3' arm
26890 + 25780 90 22.5 -30.3 NP_996636 5' arm      3' arm
26891 + 26174 83 20 -23.8 NP_996636 5' arm      3' arm
26892 + 26842 90 20 -23.2 NP_996638 5' arm      3' arm
26893 + 27419 79 21 -24.7 NP_996639 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.