miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27240 - 105021 90 22.5 -22.2 YP_003866 5' arm      3' arm
27239 - 102452 90 21 -22.8 YP_003862 5' arm      3' arm
27238 - 101861 90 21 -33.6 YP_003862 5' arm      3' arm
27237 - 98729 87 20 -20.4 YP_003857 5' arm      3' arm
27236 - 98353 85 19.5 -19.6 YP_003857 5' arm      3' arm
27235 - 98155 88 21.5 -22.2 YP_003857 5' arm      3' arm
27234 - 97850 90 24 -25 YP_003856 5' arm      3' arm
27233 - 97367 89 20 -21 YP_003856 5' arm      3' arm
27232 - 95753 86 20.5 -25.6 YP_003855 5' arm      3' arm
27231 - 94357 83 19.5 -19.9 YP_003855 5' arm      3' arm
27230 - 92592 90 23 -29.2 YP_003853 5' arm      3' arm
27229 - 91325 90 19.5 -23.8 YP_003852 5' arm      3' arm
27228 - 90328 90 21.5 -19.8 YP_003852 5' arm      3' arm
27227 - 90170 90 19 -23.5 YP_003852 5' arm      3' arm
27226 - 89478 89 21.5 -26.5 YP_003852 5' arm      3' arm
27225 - 88274 90 22.5 -27.8 YP_003851 5' arm      3' arm
27224 - 87704 90 22.5 -23.4 YP_003851 5' arm      3' arm
27223 - 87363 89 20 -25.2 YP_003851 5' arm      3' arm
27222 - 86971 89 21.5 -22 YP_003851 5' arm      3' arm
27221 - 84645 87 19 -23.1 YP_003848 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.