miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27030 + 11029 90 19 -22.7 YP_003778 5' arm      3' arm
27036 + 12987 89 22.5 -30.8 YP_003781 5' arm      3' arm
27037 + 13230 87 22.5 -21.6 YP_003781 5' arm      3' arm
27029 + 10427 90 22 -33.6 YP_003778 5' arm      3' arm
27028 + 9476 87 20.5 -25.8 YP_003778 5' arm      3' arm
27032 + 11519 89 20.5 -24.7 YP_003778 5' arm      3' arm
27033 + 12550 87 20.5 -19.6 YP_003781 5' arm      3' arm
27031 + 11173 89 19.5 -23.5 YP_003778 5' arm      3' arm
27034 + 12681 85 19.5 -20 YP_003781 5' arm      3' arm
27026 + 7239 90 19.5 -21.84 YP_003777 5' arm      3' arm
27027 + 9329 89 21 -25.8 YP_003778 5' arm      3' arm
27025 + 6377 87 22 -20.5 YP_003777 5' arm      3' arm
27016 + 425 90 21 -32 YP_003772 5' arm      3' arm
27019 + 1974 90 21 -23.6 YP_003774 5' arm      3' arm
27017 + 1380 90 19.5 -20.2 YP_003773 5' arm      3' arm
27020 + 2445 90 19.5 -21.5 YP_003774 5' arm      3' arm
27021 + 3180 83 19 -20 YP_003775 5' arm      3' arm
27022 + 4777 90 19 -20.74 YP_003777 5' arm      3' arm
27023 + 5464 89 23.5 -22.5 YP_003777 5' arm      3' arm
27024 + 6181 89 22 -32.5 YP_003777 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.